Области научных интересов
Ключевые слова: Пространственная организация генома; структура хроматина; энхансер-промоторная коммуникация; эпигенетика; регуялция транскрипции / Genome spatial organization; chromatin structure; enhancer-promoter communication; epigenetics; transcription regulation
Статьи в журналах
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- 2023 Trisomies Reorganize Human 3D Genome
- Zhegalova Irina V., Vasiluev Petr A., Flyamer Ilya M., Shtompel Anastasia S., Glazyrina Eugene, Shilova Nadezda, Minzhenkova Marina, Markova Zhanna, Petrova Natalia V., Dashinimaev Erdem B., Razin Sergey V., Ulianov Sergey V.
- в журнале International Journal of Molecular Sciences, издательство MDPI (Basel, Switzerland), том 24, № 22, с. 16044-16044 DOI
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- 2023 Unraveling the Polysaccharide Biosynthesis Potential of Ganoderma lucidum: A Chromosome-Level Assembly Using Hi-C Sequencing
- Sonets IV, Dovidchenko NV, Ulianov SV, Yarina MS, Koshechkin SI, Razin SV, Krasnopolskaya LM, Tyakht AV
- в журнале Journal of Fungi, издательство MDPI (Basel, Switzerland), том 9, № 10, с. 1-13 DOI
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- 2023 Enhancer Function in the 3D Genome
- Razin Sergey V., Ulianov Sergey V., Iarovaia Olga V.
- в журнале Genes, издательство MDPI (Basel, Switzerland), том 14, № 6, с. 1277 DOI
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- 2023 RNA-DNA interactomes of three prokaryotes uncovered by proximity ligation
- Gavrilov Alexey A., Evko Grigory S., Galitsyna Aleksandra A., Ulianov Sergey V., Kochetkova Tatiana V., Merkel Alexander Y., Tyakht Alexander V., Razin Sergey V.
- в журнале Communications Biology, издательство Springer Nature (Switzerland), том 6, № 473 DOI
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- 2023 A Kaleidoscope of Keratin Gene Expression and the Mosaic of Its Regulatory Mechanisms
- Kalabusheva Ekaterina P., Shtompel Anastasia S., Rippa Alexandra L., Ulianov Sergey V., Razin Sergey V., Vorotelyak Ekaterina A.
- в журнале International Journal of Molecular Sciences, издательство MDPI (Basel, Switzerland), том 24, № 6, с. 1-23 DOI
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- 2023 HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases
- Kobets Victoria A., Ulianov Sergey V., Galitsyna Aleksandra A., Doronin Semen A., Mikhaleva Elena A., Gelfand Mikhail S., Shevelyov Yuri Y., Razin Sergey V., Khrameeva Ekaterina E.
- в журнале Briefings in Bioinformatics, издательство Oxford University Press (United Kingdom) DOI
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- 2023 3D genome alterations and editing in pathology
- Tiukacheva Eugenia A., Ulianov Sergey V., Karpukhina Anna, Razin Sergey V., Vassetzky Yegor
- в журнале Molecular Therapy, издательство Nature Publishing Group (United Kingdom) DOI
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- 2022 Сегрегация кластеров α- и β-глобиновых генов в ходе эволюции позвоночных – случайность или закономерность?
- Яровая О.В., Ульянов С.В., Юдинкова Е.С., Разин С.В.
- в журнале Биохимия, издательство ФГБУ "Издательство "Наука" (Москва), том 87, № 9, с. 1301-1317 DOI
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- 2022 Dosage Compensation in Drosophila: Its Canonical and Non-Canonical Mechanisms
- Shevelyov Yuri Y., Ulianov Sergey V., Gelfand Mikhail S., Belyakin Stepan N., Razin Sergey V.
- в журнале International Journal of Molecular Sciences, издательство MDPI (Basel, Switzerland), том 23, № 18, с. 10976 DOI
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- 2022 Recurrent Translocations in Topoisomerase Inhibitor-Related Leukemia Are Determined by the Features of DNA Breaks Rather Than by the Proximity of the Translocating Genes
- Lomov N.A., Viushkov V.S., Ulianov S.V., Gavrilov A.A., Alexeyevsky D.A., Artemov A.A., Razin S.V., Rubtsov M.A.
- в журнале International Journal of Molecular Sciences, издательство MDPI (Basel, Switzerland), том 23 DOI
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- 2022 Genome-Directed Cell Nucleus Assembly
- Razin Sergey V., Ulianov Sergey V.
- в журнале Biology, издательство MDPI Publishing (Basel, Switzerland, Switzerland), том 11, № 5, с. 708 DOI
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- 2022 Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila
- Ilyin Artem A., Kononkova Anna D., Golova Anastasia V., Shloma Viktor V., Olenkina Oxana M., Nenasheva Valentina V., Abramov Yuri A., Kotov Alexei A., Maksimov Daniil A., Laktionov Petr P., Pindyurin Alexey V., Galitsyna Aleksandra A., Ulianov Sergey V., Khrameeva Ekaterina E., Gelfand Mikhail S., Belyakin Stepan N., Razin Sergey V., Shevelyov Yuri Y.
- в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 50, № 6, с. 3203-3225 DOI
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- 2022 SETDB1 fuels the lung cancer phenotype by modulating epigenome, 3D genome organization and chromatin mechanical properties
- Zakharova Vlada V., Magnitov Mikhail D., Del Maestro Laurence, Ulianov Sergey V., Glentis Alexandros, Uyanik Burhan, Williart Alice, Karpukhina Anna, Demidov Oleg, Joliot Veronique, Vassetzky Yegor S., Mège René-Marc, Piel Matthieu, Razin Sergey V., Ait-Si-Ali Slimane
- в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), с. 1-25 DOI
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- 2022 Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments
- Magnitov Mikhail D., Garaev Azat K., Tyakht Alexander V., Ulianov Sergey V., Razin Sergey V.
- в журнале BMC Bioinformatics, издательство BioMed Central (London), том 23, № 1, с. 1-8 DOI
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- 2022 Pluripotency factors determine gene expression repertoire at zygotic genome activation
- Gao M., Veil M., Rosenblatt M., Riesle A.J., Gebhard A., Hass H., Buryanova L., Yampolsky L., Gruning B., Ulianov S.V., Timmer J., Onichtchouk D.
- в журнале Nature communications, издательство Nature Pub. Group (United Kingdom), том 13, с. 1-19 DOI
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- 2022 Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients
- Ivanova Valeriia, Chernevskaya Ekaterina, Vasiluev Petr, Ivanov Artem, Tolstoganov Ivan, Shafranskaya Daria, Ulyantsev Vladimir, Korobeynikov Anton, Razin Sergey V., Beloborodova Natalia, Ulianov Sergey V., Tyakht Alexander
- в журнале Frontiers in microbiology, издательство Frontiers Research Foundation (Switzerland), том 12 DOI
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- 2021 Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data
- Kos PI, Galitsyna AA, Ulianov SV, Gelfand MS, Razin SV, Chertovich AV
- в журнале PLoS Computational Biology, издательство Public Library of Science (United States), том 17, № 11, с. e1009546 DOI
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- 2021 The two waves in single-cell 3D genomics
- Ulianov Sergey V., Razin Sergey V.
- в журнале Seminars in Cell and Developmental Biology, издательство Academic Press (United States) DOI
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- 2021 Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells
- Ulianov Sergey V., Velichko Artem K., Magnitov Mikhail D., Luzhin Artem V., Golov Arkadiy K., Ovsyannikova Natalia, Kireev Igor I., Gavrikov Alexey S., Mishin Alexander S., Garaev Azat K., Tyakht Alexander V., Gavrilov Alexey A., Kantidze Omar L., Razin Sergey V.
- в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
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- 2021 LASCA: loop and significant contact annotation pipeline
- Luzhin Artem V., Golov Arkadiy K., Gavrilov Alexey A., Velichko Artem K., Ulianov Sergey V., Razin Sergey V., Kantidze Omar L.
- в журнале Scientific reports, издательство Nature Publishing Group (United Kingdom), № 11, с. 6361 DOI
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- 2021 Order and stochasticity in the folding of individual Drosophila genomes
- Ulianov Sergey V., Zakharova Vlada V., Galitsyna Aleksandra A., Kos Pavel I., Polovnikov Kirill E., Flyamer Ilya M., Mikhaleva Elena A., Khrameeva Ekaterina E., Germini Diego, Logacheva Mariya D., Gavrilov Alexey A., Gorsky Alexander S., Nechaev Sergey K., Gelfand Mikhail S., Vassetzky Yegor S., Chertovich Alexander V., Shevelyov Yuri Y., Razin Sergey V.
- в журнале Nature communications, издательство Nature Pub. Group (United Kingdom), том 12, № 1 DOI
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- 2020 Divide and Rule: Phase Separation in Eukaryotic Genome Functioning
- Razin S.V., Ulianov S.V.
- в журнале Cells, издательство MDPI (Basel, Switzerland), том 9, № 11 DOI
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- 2020 Non-backtracking walks reveal compartments in sparse chromatin interaction networks
- Polovnikov K., Gorsky A., Nechaev S., Razin S.V., Ulianov S.V.
- в журнале Scientific reports, издательство Nature Publishing Group (United Kingdom), том 10, № 1 DOI
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- 2020 Benchmark of software tools for prokaryotic chromosomal interaction domain identification
- Magnitov Mikhail D., Kuznetsova Veronika S., Ulianov Sergey V., Razin Sergey V., Tyakht Alexander V.
- в журнале Bioinformatics, издательство Oxford University Press (United Kingdom) DOI
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- 2020 Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics
- Gavrilov AA, Zharikova AA, Galitsyna AA, Luzhin AV, Rubanova NM, Golov AK, Petrova NV, Logacheva MD, Kantidze OL, Ulianov SV, Magnitov MD, Mironov AA, Razin SV
- в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 48, № 12, с. 6699-6714 DOI
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- 2019 3D геномика
- Разин С.В., Ульянов С.В., Гаврилов А.А.
- в журнале Молекулярная биология, том 53, № 6, с. 911-923 DOI
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- 2019 C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries
- Golov Arkadiy K., Ulianov Sergey V., Luzhin Artem V., Kalabusheva Ekaterina P., Kantidze Omar L., Flyamer Ilya M., Razin Sergey V., Gavrilov Alexey A.
- в журнале Methods, издательство Academic Press (United States), с. 1-32 DOI
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- 2019 CRISPR/Cas9-generated mouse model of Duchenne muscular dystrophy recapitulating a newly identified large 430 kb deletion in the human DMD gene
- Egorova TV, Zotova ED, Reshetov DA, Polikarpova AV, Vassilieva SG, Vlodavets DV, Gavrilov AA, Ulianov SV, Buchman VL, Deykin AV
- в журнале DMM Disease Models and Mechanisms, издательство The Company of Biologists Ltd. (United Kingdom), том 12, № 4 DOI
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- 2019 Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila
- Ulianov Sergey V., Doronin Semen A., Khrameeva Ekaterina E., Kos Pavel I., Luzhin Artem V., Starikov Sergei S., Galitsyna Aleksandra A., Nenasheva Valentina V., Ilyin Artem A., Flyamer Ilya M., Mikhaleva Elena A., Logacheva Mariya D., Gelfand Mikhail S., Chertovich Alexander V., Gavrilov Alexey A., Razin Sergey V., Shevelyov Yuri Y.
- в журнале Nature communications, издательство Nature Pub. Group (United Kingdom), № 1176, с. 1-11 DOI
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- 2019 The Nuclear Lamina as an Organizer of Chromosome Architecture
- Shevelyov Yuri Y., Ulianov Sergey V.
- в журнале Cells, издательство MDPI (Basel, Switzerland), том 8, № 136, с. 1-13 DOI
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- 2018 Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes
- Luzhin AV, Flyamer IM, Khrameeva EE, Ulianov SV, Razin SV, Gavrilov AA
- в журнале Journal of Cellular Biochemistry, издательство John Wiley & Sons Inc. (United States) DOI
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- 2018 Single-cell Hi-C discloses general principles of the individual genome folding in Drosophila
- Zakharova VS, Galitsyna AA, Polovnikov KE, Khrameeva EE, Logacheva MD, Mikhaleva EA, Vassetzky ES, Gavrilov AA, Shevelev YY, Nechaev SK, Ulianov SV, Razin SV
- в журнале FEBS open bio, издательство John Wiley & Sons Inc. (United States), том 8, № Suppl 1, с. 65-66
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- 2018 Genetic and Epigenetic Mechanisms of β-Globin Gene Switching
- Iarovaia O.V., Kovina A.P., Petrova N.V., Razin S.V., Ioudinkova E.S., Vassetzky Y.S., Ulianov S.V.
- в журнале Biochemistry (Moscow), издательство Pleiades Publishing, Ltd (Road Town, United Kingdom), том 83, № 4, с. 381-392 DOI
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- 2018 Роль ядерной ламины в репрессии генов и в поддержании хромосомной архитектуры в ядре
- Шевелев Ю.Я., Ульянов С.В.
- в журнале Биохимия, издательство ФГБУ "Издательство "Наука" (Москва), том 83, № 4
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- 2017 3D-ГЕНОМИКА ПОМОГАЕТ ПОНЯТЬ, КАК РАБОТАЮТ НАШИ ГЕНЫ
- Разин С.В., Ульянов С.В.
- в журнале Коммерсантъ Наука, № 5, с. 25-27
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- 2017 Gene functioning and storage within a folded genome
- Razin S.V., Ulianov S.V.
- в журнале Cellular and Molecular Biology Letters, издательство University of Wroclaw (Poland), том 22, с. 18 DOI
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- 2017 Single-cell Hi-C bridges microscopy and genome-wide sequencing approaches to study 3D chromatin organization
- Ulianov Sergey V., Kikue Tachibana-Konwalski, Razin Sergey V.
- в журнале BioEssays, издательство John Wiley & Sons Inc. (United States), том 39, с. 1-8 DOI
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- 2017 Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure
- Ulianov Sergey V., Galitsyna Aleksandra A., Flyamer Ilya M., Golov Arkadiy K., Khrameeva Ekaterina E., Imakaev Maxim V., Abdennur Nezar A., Gelfand Mikhail S., Gavrilov Alexey A., Razin Sergey V.
- в журнале Epigenetics and Chromatin, издательство BioMed Central (London), том 10, № 1, с. 35 DOI
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- 2017 Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
- Flyamer Ilya M., Gassler Johanna, Imakaev Maxim, Brandão Hugo B., Ulianov Sergey V., Abdennur Nezar, Razin Sergey V., Mirny Leonid A., Tachibana-Konwalski Kikuë
- в журнале Nature, издательство Nature Publishing Group (United Kingdom), том 544, с. 110-114 DOI
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- 2017 Evolution of the genome 3D organization: comparison of fused and segregated globin gene clusters
- Kovina AP, Petrova NV, Gushchanskaya ES, Dolgushin KV, Gerasimov ES, Galitsyna AA, Penin AA, Flyamer IM, Ioudinkova ES, Gavrilov AA, Vassetzky YS, Ulianov SV, Iarovaia OV, Razin S.V.
- в журнале Molecular Biology and Evolution, издательство Oxford University Press (United Kingdom) DOI
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- 2017 Cамоорганизация хроматиновой фибриллы в топологически-ассоциированные домены
- Разин С.В., Гаврилов А.А., Кос П., Ульянов С.В.
- в журнале Биоорганическая химия, издательство Российская академия наук (Москва), том 43, № 2, с. 115-123 DOI
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- 2016 Механизмы укладки хроматиновой фибриллы в топологически-ассоциированные домены
- Ульянов С.В., Храмеева Е.К., Гаврилов А.А., Флямер И.М., Кос П., Михалева Е.А., Пенин А.А., Логачёва М.Д., Имакаев М.В., Чертович А., Гельфанд М.С., Шевелёв Ю.Я., Разин С.В.
- в журнале Acta Naturae (русскоязычная версия), издательство Парк-медиа (М.), том 2, с. 3-3
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- 2016 Lamina–associated chromatin in the context of the mammalian genome folding
- Ulianov S.V., Shevelyov Y.Y., Razin S.V.
- в журнале Biopolymers and Cell, издательство Naukova Dumka (Ukraine), том 32, № 5, с. 327-333
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- 2016 Unraveling the mechanisms of chromatin fibril packaging
- Gavrilov AA, Shevelyov YY, Ulianov SV, Khrameeva EE, Kos P., Chertovich A., Razin SV
- в журнале Nucleus, издательство Taylor & Francis (United Kingdom), том 7, № 3, с. 319-324 DOI
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- 2016 Topologically associating domains: gene warehouses adapted to serve transcriptional regulation
- Razin S.V., Gavrilov A.A., VASSETZKY Y.S., Ulianov S.V.
- в журнале Transcription, издательство Landes Bioscience (United States) DOI
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- 2016 Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
- Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P., Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A., Gelfand MS, Shevelyov YY, Razin SV
- в журнале Genome Research, издательство Cold Spring Harbor Laboratory Press (United States), том 26, с. 70-84 DOI
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- 2015 20 Active chromatin regions are sufficient to define borders of topologically associated domains in D. melanogaster interphase chromosomes
- Khrameeva E.E., Ulyanov S.V., Gavrilov A.A., Shevelyov Y.Y., Gelfand M.S., Razin S.V.
- в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 33, с. 11-12 DOI
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- 2015 Регуляторные элементы эукариотического генома, контролирующие транскрипцию
- Разин С.В., Гаврилов А.А., Ульянов С.В.
- в журнале Молекулярная биология, том 49, № 2, с. 212-223 DOI
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- 2015 Nuclear Compartments, Genome Folding, and Enhancer-Promoter Communication
- Ulianov S.V., Gavrilov A.A., Razin S.V.
- в журнале International review of cell and molecular biology, издательство Elsevier BV (Netherlands), том 315, с. 183-244 DOI
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- 2014 Пространственная организация генов домашнего хозяйства в интерфазных ядрах
- Гущанская Е.С., Артемов А.А., Ульянов С.В., Пенин А.А., Логачева М.Д., Разин С.В., Гаврилов А.А.
- в журнале Молекулярная биология, том 48, с. 1008-1018
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- 2014 The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes
- Gushchanskaya ES, Artemov AV, Ulyanov SV, Logacheva MD, Penin AA, Kotova ES, Akopov SB, Nikolaev LG, Iarovaia OV, Sverdlov ED, Gavrilov AA, Razin SV
- в журнале Epigenetics : official journal of the DNA Methylation Society, издательство Landes Bioscience (United States), том 9, № 7, с. 951-963 DOI
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- 2012 Distant activation of transcription: mechanism of enhancer action
- Kulaeva O., Nizovtseva E., Polikanov Y., Ulianov S., Studitsky V.
- в журнале Molecular and Cellular Biology, издательство American Society for Microbiology (United States)
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- 2012 Insulators in vertebrates: regulatory mechanisms and chromatin structure
- Ulianov S.V., Markova E.N., Gavrilov A.A., Razin S.V.
- в журнале Biopolymers and Cell, издательство Naukova Dumka (Ukraine), том 28, № 4, с. 252-260
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- 2012 Spatial organization of the chicken beta-globin gene domain in erythroid cells of embryonic and adult lineages
- Ulyanov SV, Gavrilov AA, Razin SV
- в журнале Epigenetics and Chromatin, издательство BioMed Central (London), том 5, № 1, с. 16 DOI
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- 2011 [Patterns of the histone modifications across the chicken alpha-globin genes domain]
- Iudinkova E.S., Bunina D.A., Ul’ianov S.V., Gavrilov A.A., Razin S.V.
- в журнале Молекулярная биология, том 45, № 4, с. 662-667 DOI
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- 2011 The inactivation of the π gene in chicken erythroblasts of adult lineage is not mediated by packaging of the embryonic part of the α-globin gene domain into a repressive heterochromatin-like structure
- Ioudinkova E.S., Ulianov S.V., Bunina D., Iarovaia O.V., Gavrilov A.A., Razin S.V.
- в журнале Epigenetics, том 6, № 12, с. 1481-1488 DOI
Ключевые слова
Хроматин, транскрипция, энхансер, С-методы, эпигенетика, Dictyostelium, Drosophila
Chromatin, transcription, enhancer, C-methods, epigenetics, Dictyostelium, Drosophila