Bioinformaticsжурнал

Статьи, опубликованные в журнале

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• • 2023 NEREL-BIO: a dataset of biomedical abstracts annotated with nested named entities
  • Loukachevitch Natalia, Manandhar Suresh, Baral Elina, Rozhkov Igor, Braslavski Pavel, Ivanov Vladimir, Batura Tatiana, Tutubalina Elena
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 39, № 4 DOI
• • 2021 Guide Tree Optimization with Genetic Algorithm to Improve Multiple Protein 3D-structure Alignment
  • Shegay Maksim, Svedas Vytas, Voevodin Vladimir, Suplatov Dmitry, Popova Nina
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom) DOI
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  • 2020 Benchmark of software tools for prokaryotic chromosomal interaction domain identification
  • Magnitov Mikhail D., Kuznetsova Veronika S., Ulianov Sergey V., Razin Sergey V., Tyakht Alexander V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom) DOI
• • 2020 LAMPA, LArge Multidomain Protein Annotator, and its application to RNA virus polyproteins
  • Gulyaeva Anastasia A., Sigorskih Andrey I., Ocheredko Elena S., Samborskiy Dmitry V., Gorbalenya Alexander E.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 1, № 9 DOI
• • 2019 parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems
  • Shegay Maksim V., Suplatov Dmitry A., Popova Nina N., Švedas Vytas K., Voevodin Vladimir V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom) DOI
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  • 2018 Mustguseal: a Server for Multiple Structure-Guided Sequence Alignment of Protein Families
  • Suplatov D.A., Kopylov K.E., Popova N.N., Voevodin Vl V., Švedas V.K.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 34, № 9, с. 1583-1585 DOI
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  • 2018 REStLESS: automated translation of glycan sequences from residue-based notation to SMILES and atomic coordinates
  • Chernyshov Ivan Yu, Toukach Philip V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 34, № 15, с. 2679-2681 DOI
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  • 2017 GRASS: semi-automated NMR-based structure elucidation of saccharides
  • Kapaev Roman R., Toukach Philip V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 34, № 6, с. 957-963 DOI
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  • 2017 StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data
  • Stavrovskaya E.D., Niranjan T., Fertig E.J., Wheelan S.J., Favorov A.V., Mironov A.A.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 33, № 20, с. 3158-3165 DOI
• • 2016 AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs
  • Kochetov Alex V., Allmer Jens, Klimenko Alexandra I., Zuraev Bulat S., Matushkin Yury G., Lashin Sergey A.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), с. btw736 DOI
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  • 2016 The OGCleaner: filtering false-positive homology clusters
  • Stanley Fujimoto M., Suvorov Anton, Jensen Nicholas O., Clement Mark J., Snell Quinn, Bybee Seth M.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 33, № 1, с. 125-127 DOI
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  • 2015 FoldNucleus: web server for the prediction of RNA and protein folding nuclei from their 3D structures
  • Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 31, № 20, с. 3374-3376 DOI
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  • 2015 GlycoRDF: an ontology to standardize glycomics data in RDF
  • Ranzinger Rene, Aoki-Kinoshita Kiyoko F., Campbell Matthew P., Kawano Shin, Lütteke Thomas, Okuda Shujiro, Shinmachi Daisuke, Shikanai Toshihide, Sawaki Hiromichi, Toukach Philip, Matsubara Masaaki, Yamada Issaku, Narimatsu Hisashi
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 31, № 6, с. 919-925 DOI
• • 2014 RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments
  • Soldatov RA, Vinogradova SV, Mironov AA
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 30, № 4 DOI
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  • 2014 What handedness and angles between helices has the studied three-helical protein domain?
  • Pereyaslavets L.B., Glyakina A.V., Dovidchenko N.V., Sokolovskiy I.V., Galzitskaya O.V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 31, № 6, с. 963-965 DOI
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  • 2013 A novel web server predicts amino acid residue protection against hydrogen–deuterium exchange
  • Lobanov Mikhail Yu, Suvorina Masha Yu, Dovidchenko Nikita V., Sokolovskiy Igor V., Surin Alexey K., Galzitskaya Oxana V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 29, № 11, с. 1375-1381 DOI
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  • 2013 Intron-centric estimation of alternative splicing from RNA-seq data
  • Pervouchine D.D., Knowles D.G., Guigo R.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 29, № 2, с. 273-274 DOI
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  • 2013 SBSI: An extensible distributed software infrastructure for parameter estimation in systems biology
  • Adams R., Clark A., Yamaguchi A., Hanlon N., Tsorman N., Ali S., Lebedeva G., Goltsov A., Sorokin A., Akman OE, Troein C., Millar AJ, Goryanin I., Gilmore S.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 29, № 5, с. 664-665
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  • 2010 Bridges: a tool for identifying local similarities in long sequences
  • Kondrashov Alexey S., Assis Raquel
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 26, № 16, с. 2055-2056
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  • 2010 Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase
  • Dibrova Daria V., Galperin Michael Y., Mulkidjanian Armen Y.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 26, № 12, с. 1473-1476 DOI
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  • 2010 dbTEU: a protein database of trace element utilization
  • Zhang Yan, Gladyshev Vadim N.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 26, № 5, с. 700-702 DOI
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  • 2009 FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence
  • Garbuzynskiy S.O., Lobanov M.Yu, Galzitskaya O.V.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 26, № 3, с. 326-332 DOI
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  • 2009 PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes
  • Pyrkov T.V., Chugunov A.O., Krylov N.A., Nolde D.E., Efremov R.G.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 25, № 9, с. 1201-1202 DOI
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  • 2008 Modularity of cellular networks shows general center-periphery polarization
  • Vinogradov Alexander E.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 24, № 24, с. 2814-2817 DOI
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  • 2008 Sequence analysis of GerM and SpoVS, uncharacterized bacterial ’sporulation’ proteins with widespread phylogenetic distribution
  • Rigden D.J., Galperin M.Y.
  • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 24, № 16, с. 1793-1797 DOI