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Journal of Biomolecular Structure and Dynamicsжурнал

Статьи, опубликованные в журнале

• • 2022 Canonical structural-binding modes in the calmodulin-target protein complexes
  • Denesyuk A.I., Permyakov S.E., Permyakov E.A., Johnson M.S., Denessiouk K., Uversky V.N.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-13
• • 2022 DeepA-RBPBS: A hybrid convolution and recurrent neural network combined with attention mechanism for predicting RBP binding site
  • Du Z, Xiao X., Uversky V.N.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 40, № 9, с. 4250-4258
• • 2022 Intrinsic disorder, extraterrestrial peptides, and prebiotic life on the earth
  • Kulkarni P., Salgia R., Uversky V.N.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-5
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  • 2022 Investigation of the tight binding mechanism of a new anticoagulant DD217 to factor Xa by means of molecular docking and molecular dynamics
  • Shulga Dmitry A., Tserkovnikova Natalia A., Tarasov Dmitry N., Tovbin Dmitry G.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-11 DOI
• • 2022 Shell disorder and the HIV vaccine mystery: lessons from the legendary Oswald Avery
  • Goh G.K., Uversky V.N.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 40, № 12, с. 5702-5711
• • 2022 The cytoplasmic tail of Influenza A/H1N1 virus hemagglutinin is β-structural
  • Khrustalev V.V., Kordyukova L.V., Arutyunyan A.M., Poboinev V.V., Khrustaleva T.A., Stojarov A.N., Baratova L.A., Sapon A.S., Lugin V.G.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 40, № 10, с. 4642-4661 DOI
• • 2021 Computational studies on phylogeny and drug designing using molecular simulations for COVID-19
  • Nabi F., Ahmad O., Khan Y.A., Nabi A., Md Amiruddin H., Abul Qais F., Masroor A., Hisamuddin M., Uversky V.N., Khan R.H.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-10
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  • 2020 Dodecamers derived from the crystal structure were found in the pre-crystallization solution of the transaminase from the thermophilic bacterium Thermobaculum terrenum by small-angle X-ray scattering
  • Marchenkova M.A., Konarev P.V., Rakitina T.V., Timofeev V.I., Boikova A.S., Dyakova Y.A., Ilina K.B., Korzhenevskiy D.A., Yu Nikolaeva A., Pisarevsky Y.V., Kovalchuk M.V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 38, № 10, с. 2939-2944
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  • 2020 Numeric analysis of reversibility of classic movement equations and constructive criteria of estimating quality of molecular dynamic simulations
  • Torshin Ivan Yu, Namiot Vladimir A., Esipova Natalia G., Tumanyan Vladimir G.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-11 DOI
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  • 2020 Precipitant ions influence on lysozyme oligomers stability investigated by molecular dynamics simulation at different temperatures
  • Kordonskaya Yuliya V., Marchenkova Margarita A., Timofeev Vladimir I., Dyakova Yulia A., Pisarevsky Yurii V., Kovalchuk Michael V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-8 DOI
• 
  • 2020 Synthetic carboline compounds targeting protein: biophysical and biological perspective
  • Bhattacharjee Paromita, Sarkar Sarita, Shmatova Olga I., Nenajdenko Valentine G., Pandya Prateek, Bhadra Kakali
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-18 DOI
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  • 2020 The binding of precipitant ions in the tetragonal crystals of hen egg white lysozyme
  • Marchenkova M.A., Kuranova I.P., Timofeev V.I., Boikova A.S., Dorovatovskii P.V., Dyakova Y.A., Ilina K.B., Pisarevskiy Y.V., Kovalchuk M.V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 38, № 17, с. 5159-5172
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  • 2020 The impact of long-distance mutations on the Ω-loop conformation in TEM type β-lactamases
  • Shcherbinin Dmitrii, Veselovsky Alexander, Rubtsova Maya, Grigorenko Vitaly, Egorov Alexey
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 38, № 8, с. 2369-2376 DOI
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  • 2019 Dodecamers derived from the crystal structure were found in the pre-crystallization solution of the transaminase from the thermophilic bacterium Thermobaculum terrenum by small-angle X-ray scattering
  • Marchenkova Margarita A., Konarev Petr V., Rakitina Tatiana V., Timofeev Vladimir I., Boikova Anastasiia S., Dyakova Yulia A., Ilina Kseniia B., Korzhenevskiy Dmitry A., Nikolaeva Alena Yu, Pisarevsky Yurii V., Kovalchuk Mikhail V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-6 DOI
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  • 2019 G-quadruplex-forming oligodeoxyribonucleotides activate leukotriene synthesis in human neutrophils
  • Viryasova Galina M., Dolinnaya Nina G., Golenkina Ekaterina A., Gaponova Tatjana V., Viryasov Mikhail B., Romanova Yulia M., Sud'ina Galina F.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 37, № 14, с. 3649-3659 DOI
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  • 2019 Human p38α Mitogen-Activated Protein Kinase in the Asp168-Phe169-Gly170-in (DFG-in) state can bind allosteric inhibitor Doramapimod
  • Suplatov D.A., Kopylov K.E., Sharapova Y.A., Švedas V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 37, № 8, с. 2049-2060 DOI
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  • 2019 Interaction of deoxyribonucleic acid with deoxyribonucleic acid-binding protein from starved cells: cluster formation and crystal growing as a model of initial stages of nucleoid biocrystallization
  • Eduard Tereshkin, Ksenia Tereshkina, Natalia Loiko, Alexei Chulichkov, Vladislav Kovalenko, Yurii Krupyanskii
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 37, № 10, с. 2600-2607 DOI
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  • 2019 Intersegment contacts determine geometry of the open and closed states in P-loop channels
  • Tikhonov Denis B., Zhorov Boris S.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), с. 1-16 DOI
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  • 2019 Matrix proteins protein of enveloped viruses: a case study of Influenza A virus M1
  • Kordyukova Larisa V., Shtykova Eleonora V., Baratova Lyudmila A., Svergun Dmitri I., Batishchev Oleg V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 37, № 3, с. 671-690 DOI
• • 2018 A double-edged sword: supramolecular complexes of triazavirine display multicenter binding effects which influence aggregate formation
  • Zabrodskaya Yana A., Shvetsov Alexey V., Tsvetkov Vladimir B., Egorov Vladimir V.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 37, № 12, с. 3041-3047 DOI
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  • 2018 Amphipathic secondary structure elements and putative cholesterol recognizing amino acid consensus (CRAC) motifs as governing factors of highly specific matrix protein interactions with raft-type membranes in enveloped viruses
  • Radyukhin VA, Dadinova LA, Orlov IA, Baratova LA
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 36, № 5, с. 1351-1359 DOI
• • 2018 An explanation for the narrow carbohydrate substrate specificity of adenine phosphoribosyltransferase from Thermus thermophilus from the model of the enzyme, substrate, and magnesium cation cofactor complex
  • Zayats E.A., Timofeev V.I., Kostromina M.A., Esipov R.S.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States) DOI
• • 2018 An explanation for the narrow carbohydrate substrate specificity of adenine phosphoribosyltransferase from Thermus thermophilus from the model of the enzyme, substrate, and magnesium cation cofactor complex
  • Zayats E.A., Timofeev V.I., Kostromina M.A., Esipov R.S.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States)
• • 2018 Different amyloid aggregation of smooth muscles titin in vitro
  • Yakupova E.I., Vikhlyantsev I.M., Bobyleva L.G., Penkov N.V., Timchenko A.A., Timchenko M.A., Enin G.A., Khutzian S.S., Selivanova O.M., Bobylev A.G.
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 36, № 9, с. 2237-2248 DOI
• • 2018 Interaction of deoxyribonucleic acid with deoxyribonucleic acid-binding protein from starved cells: cluster formation and crystal growing as a model of initial stages of nucleoid biocrystallization
  • E, Tereshkin, Tereshkina K., Chulichkov A., Kovalenko V., Krupyanskii YF
  • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States) DOI