ИСТИНА

Panchenko A.R.

Соавторы: Шайтан А.К., Армеев Г.А., Landsman D., Zhurkin V.B., Hua X., Carl W., Шайтан К.В., Biswas R., Cultraro C., David L., Draizen E.J., FitzGerald P., Gaykalova D.A. показать полностью..., Ghirlando R., Giaccone G., Goncearenco A., Gupta S., Huang Y., Li S., Lin Y., Mariño-Ramírez L., Meltzer P., Persinger J., Pitts S., Schrump D., Talbert P.B., Thomas M., Venugopalan A., Wang F., Wei D., Wisniewski J., Wolf Y.I., Wu C., Грибкова А.К., Комарова Г.А., Панченко Л.А., Студитский В.М., Феофанов А.В.

18 статей, 3 доклада на конференциях

Количество цитирований статей в журналах по данным Web of Science: 281, Scopus: 285

IstinaResearcherID (IRID): 3536823

Деятельность

• Статьи в журналах

  • • 2021 Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones
    • Espiritu Daniel, Gribkova Anna K., Gupta Shubhangi, Shaytan Alexey K., Panchenko Anna R.
    • в журнале Journal of Physical Chemistry B, издательство American Chemical Society (United States) DOI
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    • 2020 Integrative Modeling of Nucleosomes and Supranucleosomal Structures
    • Grigoriy Armeev, Anna Panchenko, Alexey Feofanov, Shaytan Alexey K.
    • в журнале Biophysical Journal, издательство Biophysical Society (United States), том 118, № 3 DOI
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    • 2019 Abstract OR-19: Integrative Approach on Nucleosome Complexes Modeling
    • Armeev Grigoriy A., Panchenko Anna, Shaytan Alexey K.
    • в журнале International Journal of Biomedicine, том 9, № S1, с. 13-14
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    • 2019 Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling
    • Hada Arjan, Hota Swetansu K., Luo Jie, Lin Yuan-chi, Kale Seyit, Shaytan Alexey K., Bhardwaj Saurabh K., Persinger Jim, Ranish Jeff, Panchenko Anna R., Bartholomew Blaine
    • в журнале Cell reports, издательство Cell Press (United States), том 28, № 1, с. 282-294.e6 DOI
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    • 2018 Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID
    • Шайтан А.К., Xiao H., Армеев Г.А., Gaykalova D.A., Комарова Г.А., Carl Wu, Студитский В.М., Landsman D., Panchenko A.R.
    • в журнале Nature Protocols, издательство Nature Publishing Group (United Kingdom), том 13, № 1, с. 2535-2556 DOI
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    • 2017 Hydroxyl-radical footprinting combined with molecular modeling identifies unique features of DNA conformation and nucleosome positioning
    • Shaytan Alexey K., Xiao Hua, Armeev Grigoriy A., Carl Wu, Landsman David, Panchenko Anna R.
    • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom) DOI
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    • 2017 Microsecond molecular dynamics simulations of nucleosomes:implications for nucleosome function
    • Shaytan AK, Armeev GA, Goncearenco A., Zhurkin VB, Landsman D., Panchenko AR
    • в журнале Biochemistry and Cell Biology, издательство NRC Research Press (Canada), том 95, № 2, с. 183 DOI
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    • 2017 Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres
    • Xiao H., Wang F., Wisniewski J., Shaytan AK, Ghirlando R., FitzGerald PC, Huang Y., Wei D., Li S., Landsman D., Panchenko AR, Wu C.
    • в журнале Genes and Development, издательство Cold Spring Harbor Laboratory Press (United States), том 31, № 19, с. 1958-1972 DOI
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    • 2016 Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions
    • Shaytan Alexey K., Armeev Grigoriy A., Goncearenco Alexander, Zhurkin Victor B., Landsman David, Panchenko Anna R.
    • в журнале Journal of Molecular Biology, издательство Academic Press (United States), том 428, № 1, с. 221-237 DOI
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    • 2016 Genomic profiling of multiple sequentially acquired tumor metastatic sites from an “exceptional responder” lung adenocarcinoma patient reveals extensive genomic heterogeneity and novel somatic variants driving treatment response
    • Biswas R., Gao S., Cultraro CM, Maity TK, Venugopalan A., Abdullaev Z., Shaytan AK, Carter CA, Thomas A., Rajan A., Song Y., Pitts S., Chen K., Bass S., Boland J., Hanada KI, Chen J., Meltzer PS, Panchenko AR, Yang JC, Pack S., Giaccone G., Schrump DS, Khan J., Guha U.
    • в журнале Molecular Case Studies, издательство Cold Spring Harbor Laboratory Press (United States), том 2, № 6 DOI
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    • 2016 HistoneDB 2.0: a histone database with variants—an integrated resource to explore histones and their variants
    • Draizen Eli J., Shaytan Alexey K., Mariño-Ramírez Leonardo, Talbert Paul B., Landsman David, Panchenko Anna R.
    • в журнале Database : the journal of biological databases and curation, издательство Oxford Journals (Oxford, England), том 2016 DOI
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    • 2016 Trajectories of microsecond molecular dynamics simulations of nucleosomes and nucleosome core particles
    • Shaytan Alexey K., Armeev Grigoriy A., Goncearenco Alexander, Zhurkin Victor B., Landsman David, Panchenko Anna R.
    • в журнале Data in Brief, издательство Elsevier Inc. (США), том 7, с. 1678-1681 DOI
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    • 2015 6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations
    • Shaytan Alexey K., Armeev Grigoriy A., Goncearenco Alexander, Zhurkin Victor B., Landsman David, Panchenko Anna R.
    • в журнале Journal of Biomolecular Structure and Dynamics, издательство Adenine Press (United States), том 33, № sup1, с. 3-3 DOI
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    • 2015 Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers
    • Шайтан А.К., Landsman D., Panchenko A.R.
    • в журнале Current Opinion in Structural Biology, издательство Elsevier BV (Netherlands), том 32, с. 48-57 DOI
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    • 2014 Physicochemical mechanisms of protein regulation by phosphorylation
    • Nishi H., Shaytan A., Panchenko AR
    • в журнале Frontiers in genetics, издательство Frontiers Research Foundation. (Lausanne, Switzerland), том 5, с. 270 DOI
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    • 2005 Evolutionary Plasticity of Protein Families: Coupling Between Sequence and Structure Variation
    • Panchenko Anna R., Wolf Yuri I., Panchenko Larisa A., Thomas Madej
    • в журнале Proteins, том 61, № 3, с. 535-544
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    • 1992 POSSIBLE EFFECTS OF DYNAMIC UNORDERLINESS OF BIOLOGICAL-SYSTEMS ON THE PARAMETERS OF INTRAMOLECULAR MOBILITY DETERMINED BY MOSSBAUER-SPECTROSCOPY
    • PANCHENKO AR, SHAYTAN KV
    • в журнале Biophysics, издательство Maik Nauka/Interperiodica Publishing (Russian Federation), том 37, № 6, с. 1029-1034
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    • 1992 [The mechanism of action of pressure on intramolecular protein dynamics]
    • Panchenko A.R., Shaitan K.V.
    • в журнале Molekuliarnaia biologiia, издательство Russian Academy of Sciences (Russian Federation), том 26, № 5, с. 1116-21

• Доклады на конференциях

  • • 2019 NUCLEOSOME MODELING AT ATOMISTIC DETAIL HELPS TO INTERPRET BIOPHYSICAL EXPERIMENTS (Стендовый)
    • Авторы: Шайтан А.К., Армеев Г.А., Panchenko A.R.
    • Multiscale Modeling of Chromatin: Bridging Experiment with Theory, Les Houches, Франция, 31 марта - 5 апреля 2019
  • • 2017 Nucleosome dynamics, histone variants and DNA breaking by hydroxyl-radicals (Стендовый)
    • Авторы: Hua Xiao, Grigoriy Armeev, Shaytan Alexey K., David Landsman, Panchenko Anna R., Carl Wu
    • Keystone Symposia on Molecular and Cellular Biology "Genomic instability and DNA repair", Санта Фе, США, 2-7 апреля 2017
  • • 2016 Nucleosome Dynamics at Microsecond Timescale: DNA-Protein Interac- tions, Water-Mediated Interactions and Nucleosome Formation (Стендовый)
    • Авторы: Armeev Grigory A., Alexander Goncearenco, Zhurkin Victor B., David Landsman, Panchenko Anna R., Shaytan Alexey K.
    • Biophysical Society 60th Annual Meeting, Los Angeles, США, 27 февраля - 2 марта 2016